How to make a 3D scatter plot

You can use matplotlib for this. matplotlib has a mplot3d module that will do exactly what you want.

import matplotlib.pyplot as plt
import random

fig = plt.figure(figsize=(12, 12))
ax = fig.add_subplot(projection='3d')

sequence_containing_x_vals = list(range(0, 100))
sequence_containing_y_vals = list(range(0, 100))
sequence_containing_z_vals = list(range(0, 100))


ax.scatter(sequence_containing_x_vals, sequence_containing_y_vals, sequence_containing_z_vals)

The code above generates a figure like:

enter image description here

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