Graphviz itself provides a solution for rendering large graphs. Namely, Graphviz includes sfdp, a multiscale version of fdp (also in graphviz, similar to neato) for the layout of large undirected graphs which has been useful for drawing large graphs (70k nodes, 500k edges) in my project. You can find documentation for this software on the … Read more
Unfortunately not. It is technically possible to do but so far nobody has written the code.
Graphviz does a good job drawing parallel edges. You can use that with NetworkX by writing a dot file and then processing with Graphviz (e.g. neato layout below). You’ll need pydot or pygraphviz in addition to NetworkX In [1]: import networkx as nx In [2]: G=nx.MultiGraph() In [3]: G.add_edge(1,2) In [4]: G.add_edge(1,2) In [5]: nx.write_dot(G,’multi.dot’) … Read more
You should install the graphviz package in your system (not just the python package). On Ubuntu you should try: sudo apt-get install graphviz
The problem is that the path to GraphViz was not found by the pydot module as shown in the traceback: ‘GraphViz\’s executables not found’ I solved this problem on my windows 7 machine by adding the GraphViz bin directory to my computer’s PATH. Then restarting my python IDE to use the updated path. Install GraphViz … Read more
The error message is a bit misleading, as you can see here. The problem is that graphviz is not installed. But you mention that graphviz was installed using pip. This is also misleading, since that graphviz package is just a python wrapper, and the graphviz binaries have to be installed separately for the python wrapper … Read more
Answer for pydot >= 1.1: The incompatibility of (upstream) pydot has been fixed by 6dff94b3f1, and thus pydot >= 1.1 will be compatible with pyparsing >= 1.5.7. Answer applicable to pydot <= 1.0.28: For anyone else who comes across this, it is due to the changes in pyparsing from 1.x to the 2.x release. To … Read more
Hmm, this seems to be a bit of an old question, but since I’ve been messing about with Doxygen configuration last few days, while my head’s still full of current info let’s have a stab at it – I think the previous answers almost have it: The missing option is to add COLLABORATION_GRAPH = YES … Read more
I also had this problem on Ubuntu 16.04. Fixed by running sudo apt-get install graphviz in addition to the pip install I had already performed.
You can use pos attribute (https://www.graphviz.org/doc/info/attrs.html#d:pos), e.g.: xxx [ label = xxx pos = “0,0!” ] yyy [ label = yyy pos = “10,10!” ] You will also have to specify neato or fdp layout engine, so that dot command-line would be (for fdp): dot -Kfdp -n -Tpng -o sample.png sample.dot