You will need to devise an algorithm to extract the data in a usable format. Regardless of which PDF library you use, you will need to do this. Characters and graphics are drawn by a series of stateful drawing operations, i.e. move to this position on the screen and draw the glyph for character ‘c’.
I suggest that you extend org.apache.pdfbox.pdfviewer.PDFPageDrawer and override the strokePath method. From there you can intercept the drawing operations for horizontal and vertical line segments and use that information to determine the column and row positions for your table. Then its a simple matter of setting up text regions and determining which numbers/letters/characters are drawn in which region. Since you know the layout of the regions, you’ll be able to tell which column the extracted text belongs to.
Also, the reason you may not have spaces between text that is visually separated is that very often, a space character is not drawn by the PDF. Instead the text matrix is updated and a drawing command for ‘move’ is issued to draw the next character and a “space width” apart from the last one.
Good luck.