Currently Bootstrap 3.x does not support jQuery 3.x as reported here: https://github.com/twbs/bootstrap/issues/16834
The issue is caused by:
jQuery 3 is more strict than jQuery 2. It’s like XHTML and HTML.
Backward compatibility is preserved and code doesn’t look like a mess.
If I’m not mistaken, all you need to do is replace show() and hide()
functions with .css(‘display’, ”) or addClass(‘hidden’) and fix a
selector in alert.js (QUnit fails on this line because $(‘#’) is
invalid in jQuery 3)
It is fixed in the Bootstrap 3.3.7 release: https://github.com/twbs/bootstrap/issues/16834#issuecomment-225039913