Give the path relative to your project.
Create a folder called resources
in your src
and put your config file there.
configuration.configure("/resources/hibernate.cfg.xml");
And If you check your code
Configuration configuration = new Configuration().configure( "C:\\Users\\Nikolay_Tkachev\\workspace\\hiberTest\\src\\logic\\hibernate.cfg.xml");
return new Configuration().configure().buildSessionFactory();
In two lines you are creating two configuration objects.
That should work(haven’t tested) if you write,
Configuration configuration = new Configuration().configure( "C:\\Users\\Nikolay_Tkachev\\workspace\\hiberTest\\src\\logic\\hibernate.cfg.xml");
return configuration.buildSessionFactory();
But It fails after you deploy on the server,Since you are using system path than project relative path.